Hi Nick,
I found a small bug in recon-all that prevents the -showedits flag from
working in conjunction with expert-options:
Line 785 in recon-all of v5.1 currently has an extraneous closing
parenthesis:
if (-e $XOptsFile)) then
but should be:
if (-e $XOptsFile) then
Also, I'm puzzled how the resulting edits.mgz gets translated when you
load it as a segmentation -- e.g., areas with an addition to wm.mgz
appear to be assigned the value 2 in edits.mgz, and are labeled as "wm-
ON" if you load edits.mgz as a segmentation, but I don't see any entry
for "wm-ON" in FreeSurferColorLUT.txt itself. Where is the full "key"
for the values in edits.mgz?
thanks,
-MH
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