-i needs to point to the first dicom (or whichever format your scanner
data is in) in the series.
Allison
On Mon, 19 Dec 2011, LAOUCHEDI MAKHLOUF wrote:
hi eveyone
i ru the command recon-all of the 5.1 version of
freesurfer on some subjects using the following arguments : recon-all -i
database/ctr/ctr1 -subjid ctr1. it created a directory ctr1 in my
SUBJECTS_DIR directory with all the sub-directories inside, but with no
orig.mgz inside the mri sub-directory; instead of this, i found an empty
directory named orig inside the directory named mri. the reconstruction
ended with the following message :
ERROR: no run data found in /home/mlaouche/freesurf_makh/ctr1/mri. Make
sure to
have a volume called 001.mgz in
/home/mlaouche/freesurf_makh/ctr1/mri/orig.
If you have a second run of data call it 002.mgz, etc.
thanks
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