hi eveyone i ru the command recon-all of the 5.1 version of freesurfer on some subjects using the following arguments : recon-all -i database/ctr/ctr1 -subjid ctr1. it created a directory ctr1 in my SUBJECTS_DIR directory with all the sub-directories inside, but with no orig.mgz inside the mri sub-directory; instead of this, i found an empty directory named orig inside the directory named mri. the reconstruction ended with the following message :
ERROR: no run data found in /home/mlaouche/freesurf_makh/ctr1/mri. Make sure to have a volume called 001.mgz in /home/mlaouche/freesurf_makh/ctr1/mri/orig. If you have a second run of data call it 002.mgz, etc. thanks
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