What I need is basically both. I used the mris_convert command similar to your suggestion to get the inner and pial surfaces before. Now what I need, is the thickness values on each coordinate of the surface in vtk format. Do you know how to create this?
Thanks, On Mon, Dec 12, 2011 at 3:47 PM, Derin Cobia <d-co...@northwestern.edu>wrote: > Navid, > > Are you needing to convert the thickness.mgh file or a surface (e.g., > ?h.pial, ?h.white, etc) file to .vtk? We've used mris_convert many times > to create .vtk files from FS surfaces. The command is fairly > straightforward. > > mris_convert <path_to>/?h.<surface_file> <path_to>/?h.<file>.vtk > > I'm not sure you can convert the thickness.mgh files into .vtks, don't > they only contain coordinate information? Hope that helps. > > -Derin > > > > On Dec 12, 2011, at 9:13 AM, Navid Shiee wrote: > > > Hello, > > > > I was wondering if there is a command like mris_convert to create a > thickness map in vtk format (either on the white or pial surface) ? > > > > Thanks, > > > > -- > > Navid Shiee > > Ph.D. Candidate > > Laboratory of MEDical Image Computing (MEDIC) > > Image Analysis and Communication Laboratory (IACL) > > Johns Hopkins University > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > > but does not contain patient information, please contact the sender and > properly > > dispose of the e-mail. > > -- Navid Shiee Ph.D. Candidate Laboratory of MEDical Image Computing (MEDIC) Image Analysis and Communication Laboratory (IACL) Johns Hopkins University
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