surf2surf actually takes surface overlays (not surfaces themselves) as input, and they can be in any format that FS reads. The wiki is probably not up-to-date as those options are ok. doug
Daniel Wakeman wrote: > Hi John, > > It seems weird that you are using .mgz files (this suffix is for > volume files) with mri_surf2surf (whose inputs should be surfaces). > Also, it seems that several of the options you are trying I don't > believe exist at least according to the wiki (e.g. -cortex -fwhm). Are > you sure you are using the right command? > > D > > On Tue, Dec 6, 2011 at 1:28 PM, John Griffiths > <j.davidgriffi...@gmail.com> wrote: > >> Dear list, >> >> I am having the following memory allocation problem when running >> mri_surf2surf. Can't find any mention of this error on the list or the >> internet - sorry if I've missed anything. >> >> mri_surf2surf --cortex --fwhm 5.0000 --hemi lh --sval >> /home/jdg45/lh.pial_converted.mgz --tval >> /home/jdg45/CBU070282_smoother_surf.mgz --s CBU070282 >> Standard output: >> srcsubject = CBU070282 >> srcval = /home/jdg45/lh.pial_converted.mgz >> srctype = >> trgsubject = CBU070282 >> trgval = /home/jdg45/CBU070282_smoother_surf.mgz >> trgtype = >> srcsurfreg = sphere.reg >> trgsurfreg = sphere.reg >> srchemi = lh >> trghemi = lh >> frame = 0 >> fwhm-in = 0 >> fwhm-out = 5 >> label-src = (null) >> label-trg = lh.cortex.label >> OKToRevFaceOrder = 1 >> Reading source surface reg >> /work/imaging5/Freesurfer/CBU070282/surf/lh.sphere.reg >> Loading source data >> Standard error: >> MRIalloc: could not allocate 2032167524 slices >> >> Cannot allocate memory >> Return code: 254 >> >> >> Any suggestions? >> >> >> Thanks, >> john >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
