Hi John, It seems weird that you are using .mgz files (this suffix is for volume files) with mri_surf2surf (whose inputs should be surfaces). Also, it seems that several of the options you are trying I don't believe exist at least according to the wiki (e.g. -cortex -fwhm). Are you sure you are using the right command?
D On Tue, Dec 6, 2011 at 1:28 PM, John Griffiths <j.davidgriffi...@gmail.com> wrote: > Dear list, > > I am having the following memory allocation problem when running > mri_surf2surf. Can't find any mention of this error on the list or the > internet - sorry if I've missed anything. > > mri_surf2surf --cortex --fwhm 5.0000 --hemi lh --sval > /home/jdg45/lh.pial_converted.mgz --tval > /home/jdg45/CBU070282_smoother_surf.mgz --s CBU070282 > Standard output: > srcsubject = CBU070282 > srcval = /home/jdg45/lh.pial_converted.mgz > srctype = > trgsubject = CBU070282 > trgval = /home/jdg45/CBU070282_smoother_surf.mgz > trgtype = > srcsurfreg = sphere.reg > trgsurfreg = sphere.reg > srchemi = lh > trghemi = lh > frame = 0 > fwhm-in = 0 > fwhm-out = 5 > label-src = (null) > label-trg = lh.cortex.label > OKToRevFaceOrder = 1 > Reading source surface reg > /work/imaging5/Freesurfer/CBU070282/surf/lh.sphere.reg > Loading source data > Standard error: > MRIalloc: could not allocate 2032167524 slices > > Cannot allocate memory > Return code: 254 > > > Any suggestions? > > > Thanks, > john > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
