You can merge different labels into one big label with mri_mergelabels. If you want an annotation with those labels, you can use mris_label2annot to recombine your favorites back into a annotation. doug
Simmons, Andy wrote: > Dear Doug, > > Thanks very much for this - that worked perfectly for one region. > > How would I display a series of labels simultaneously, for example > superiorfrontal, superiorparietal and superiortemporal ? > > Best wishes, > > Andy > > -----Original Message----- > From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu] > Sent: 08 November 2011 18:52 > To: Simmons, Andy > Cc: Freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Visualization of FreeSurfer-defined ROI > > You can run mri_annotation2label to break the annotation up into smaller > labels, then display a single label in tksurfer (you can load it from the GUI > or on the cmd line with -label). > doug > > Simmons, Andy wrote: > >> Dear Doug, >> >> >> >> What would the equivalent process for a surface rather than a volume ? >> >> >> >> Best wishes, >> >> >> >> Andy SImmons >> >> >> >> Date: Fri, 04 Nov 2011 17:30:47 -0400 >> >> From: Douglas N Greve <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> >> >> Subject: Re: [Freesurfer] Visulaization of FreeSurfer-defined ROI >> >> To: Jade <jadein...@gmail.com <mailto:jadein...@gmail.com>> >> >> Cc: freesurfer@nmr.mgh.harvard.edu >> <mailto:freesurfer@nmr.mgh.harvard.edu> >> >> Message-ID: <4eb45987.2040...@nmr.mgh.harvard.edu >> <mailto:4eb45987.2040...@nmr.mgh.harvard.edu>> >> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> >> >> Try running mri_binarize with the --match option. The match value >> should be the id number for your ROI as defined in >> $FREESURFER_HOME/FreeSurferColorLUT.txt (eg, left hippo is 17). You >> can then load this as a segmentation or as an overlay in tkmedit. >> >> doug >> >> >> >> Jade wrote: >> >> >>> Hello Freesurfer experts, >>> >>> I am a beginner in using Freesurfer. >>> >>> I want to make a figure illustrates a specific area of ROIs (e.g., >>> >>> lh. hippocampus). How can I visulaize the Freesurfer definded ROIs? >>> >>> Thanks in advance! >>> >> >> >> >> >> ---- >> >> >> >> Dr Andy Simmons >> >> Reader in Neuroimaging & Consultant Clinical Scientist >> >> Centre for Neuroimaging Sciences and NIHR Biomedical Research Centre >> >> Institute of Psychiatry, Box P089 >> >> Kings College London >> >> De Crespigny Park >> >> London, SE5 8AF, UK >> >> Email - andy.simm...@kcl.ac.uk >> >> Webpage - >> http://www.iop.kcl.ac.uk/staff/profile/default.aspx?go=10338 >> >> Directions - >> http://www.iop.kcl.ac.uk/virtual/?path=/about/how-to-find-the-institut >> e-of-psychiatry/ >> >> >> ResearcherID - http://www.researcherid.com/rid/B-8848-2008 >> >> Fax +44 (0)203 228 2116 >> >> >> >> Description: Description: Untitled >> 1:Users:vincent:Desktop:Unknown.jpeg <http://msc-neuroimaging.com/> >> >> >> >> ---------------------------------------------------------------------- >> -- >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail. > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
