You can run mri_annotation2label to break the annotation up into smaller labels, then display a single label in tksurfer (you can load it from the GUI or on the cmd line with -label). doug
Simmons, Andy wrote: > > Dear Doug, > > > > What would the equivalent process for a surface rather than a volume ? > > > > Best wishes, > > > > Andy SImmons > > > > Date: Fri, 04 Nov 2011 17:30:47 -0400 > > From: Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > Subject: Re: [Freesurfer] Visulaization of FreeSurfer-defined ROI > > To: Jade <jadein...@gmail.com <mailto:jadein...@gmail.com>> > > Cc: freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu> > > Message-ID: <4eb45987.2040...@nmr.mgh.harvard.edu > <mailto:4eb45987.2040...@nmr.mgh.harvard.edu>> > > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > > > Try running mri_binarize with the --match option. The match value > should be the id number for your ROI as defined in > $FREESURFER_HOME/FreeSurferColorLUT.txt (eg, left hippo is 17). You > can then load this as a segmentation or as an overlay in tkmedit. > > doug > > > > Jade wrote: > > > Hello Freesurfer experts, > > > > > > I am a beginner in using Freesurfer. > > > > > > I want to make a figure illustrates a specific area of ROIs (e.g., > > > lh. hippocampus). How can I visulaize the Freesurfer definded ROIs? > > > > > > Thanks in advance! > > > > > > ---- > > > > Dr Andy Simmons > > Reader in Neuroimaging & Consultant Clinical Scientist > > Centre for Neuroimaging Sciences and NIHR Biomedical Research Centre > > Institute of Psychiatry, Box P089 > > Kings College London > > De Crespigny Park > > London, SE5 8AF, UK > > Email - andy.simm...@kcl.ac.uk > > Webpage - http://www.iop.kcl.ac.uk/staff/profile/default.aspx?go=10338 > > Directions - > http://www.iop.kcl.ac.uk/virtual/?path=/about/how-to-find-the-institute-of-psychiatry/ > > > > ResearcherID - http://www.researcherid.com/rid/B-8848-2008 > > Fax +44 (0)203 228 2116 > > > > Description: Description: Untitled > 1:Users:vincent:Desktop:Unknown.jpeg <http://msc-neuroimaging.com/> > > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
