sure On Fri, 14 Oct 2011, Vy Dinh wrote:
> Hi Bruce, > > From your last response, does that mean then that we can add the voxels back > to extend the pial surface that we mistakenly retracted in the previous edit? > > Best, > > Vy T.U. Dinh > Research Assistant, Neurological Sciences > Rush University Medical Center > Phone: (312) 563-3853 > Fax: (312) 563-4660 > Email: vy_d...@rush.edu > > ________________________________________ > From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] > Sent: Thursday, October 13, 2011 3:13 PM > To: Allison Player > Cc: Douglas N Greve; Vy Dinh; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Automatic corrections log/diary and questions about > Tkmedit color options > > we do however record manual edits in the volumes themselves. Erasing sets > things to 1 (not 0) and editing them on turns them to 255 so you can > always recover edits that you have made > > cheers > Bruce > On Thu, 13 Oct 2011, Allison Player > wrote: > >> I believe if you go to the View menu you can select "Edited voxels" which >> will show what you edited in that session in blue. >> >> If you run: >> recon-all -show-edits -s subjid >> >> this will show you white matter and brainmask edits you have made I >> belive. >> >> We don't print a log of the manual correections but that is an interesting >> idea. >> Allison >> >> On Thu, 13 Oct 2011, Douglas N Greve wrote: >> >>> I don't know about the rest, but you can change the cursor and surface >>> colors with View->Configure >>> >>> Vy Dinh wrote: >>>> Dear Experts, >>>> >>>> Does Freesurfer print an automatic log or diary of the manual >>>> corrections (to a brainmask) made in Tkmedit? >>>> >>>> Also, is there any way that I can change the color of the edited >>>> voxels? It would be great to view the edited voxels as anything but >>>> black and white (eg dark blue and a bright yellow respectively) when >>>> reviewing the corrections. Is it possible to change the color of the >>>> crosshair or the surface boundaries? Because the crosshair and the >>>> pial surface boundary are both red, it is quite difficult to locate >>>> the crosshair when changing the views. I am also concerned that the >>>> red/green lines may be an issue for colorblind users. >>>> >>>> Best, >>>> >>>> Vy T.U. Dinh >>>> Research Assistant, Neurological Sciences >>>> Rush University Medical Center >>>> Phone: (312) 563-3853 >>>> Fax: (312) 563-4660 >>>> Email: vy_d...@rush.edu <mailto:vy_d...@rush.edu> >>>> ------------------------------------------------------------------------ >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
