Hi Bruce, >From your last response, does that mean then that we can add the voxels back >to extend the pial surface that we mistakenly retracted in the previous edit?
Best, Vy T.U. Dinh Research Assistant, Neurological Sciences Rush University Medical Center Phone: (312) 563-3853 Fax: (312) 563-4660 Email: vy_d...@rush.edu ________________________________________ From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Thursday, October 13, 2011 3:13 PM To: Allison Player Cc: Douglas N Greve; Vy Dinh; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Automatic corrections log/diary and questions about Tkmedit color options we do however record manual edits in the volumes themselves. Erasing sets things to 1 (not 0) and editing them on turns them to 255 so you can always recover edits that you have made cheers Bruce On Thu, 13 Oct 2011, Allison Player wrote: > I believe if you go to the View menu you can select "Edited voxels" which > will show what you edited in that session in blue. > > If you run: > recon-all -show-edits -s subjid > > this will show you white matter and brainmask edits you have made I > belive. > > We don't print a log of the manual correections but that is an interesting > idea. > Allison > > On Thu, 13 Oct 2011, Douglas N Greve wrote: > >> I don't know about the rest, but you can change the cursor and surface >> colors with View->Configure >> >> Vy Dinh wrote: >>> Dear Experts, >>> >>> Does Freesurfer print an automatic log or diary of the manual >>> corrections (to a brainmask) made in Tkmedit? >>> >>> Also, is there any way that I can change the color of the edited >>> voxels? It would be great to view the edited voxels as anything but >>> black and white (eg dark blue and a bright yellow respectively) when >>> reviewing the corrections. Is it possible to change the color of the >>> crosshair or the surface boundaries? Because the crosshair and the >>> pial surface boundary are both red, it is quite difficult to locate >>> the crosshair when changing the views. I am also concerned that the >>> red/green lines may be an issue for colorblind users. >>> >>> Best, >>> >>> Vy T.U. Dinh >>> Research Assistant, Neurological Sciences >>> Rush University Medical Center >>> Phone: (312) 563-3853 >>> Fax: (312) 563-4660 >>> Email: vy_d...@rush.edu <mailto:vy_d...@rush.edu> >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
