Can you tar up that subject and drop it to me at our file drop (url at the end of this email). doug
Ilana Hairston wrote: > from my research assistant - > > On XXX the coordinates on the right side of the screen in tkmedit > always start with a negative number. > > So that part is correct. > > Our problem is that the brain is not flipped - if freesurfer displays > radiological and SPM8zero displays neurological, then when you compare > the 2 side by side, the brains should be mirror images. Ours are not, > they are the same. > > Make sense? > > > On Tue, Sep 20, 2011 at 2:26 PM, Ilana Hairston > <hairstons...@gmail.com <mailto:hairstons...@gmail.com>> wrote: > > could you check this? > this a followup on my original email after looking at 110???yl > with Barbara and Steve. > thanks > i. > > On Tue, Sep 20, 2011 at 2:23 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > What are the talairach coords for the left hemi? The first > coordinate (x) should always be negative. > doug > > Ilana Hairston wrote: > > Hi Doug, > No, we had the lh loaded in tksurfer, and when saving a > point it showed up on the _left_ in tkmedit (i.e., the > right side). > thanks > ilana > > > On Tue, Sep 20, 2011 at 11:34 AM, weiland, Barbara > <bweil...@med.umich.edu <mailto:bweil...@med.umich.edu> > <mailto:bweil...@med.umich.edu > <mailto:bweil...@med.umich.edu>>> wrote: > > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>] On Behalf Of > Douglas N Greve > Sent: Wednesday, September 14, 2011 6:10 PM > To: Ilana Hairston > Cc: freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu> > <mailto:freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>> > > Subject: Re: [Freesurfer] flipped orientation in > tksurfer and tkmedit > > When you say on the "right hemi in tkmedit" do you mean > on the > right side of the image (which is the left side of the > brain)? > doug > > Ilana Hairston wrote: > > Hi there, > > We recently had a problem that tksurfer and tkmedit > were flipped > > relative to each other. Basically, when saving a > point in the left > > hemisphere in tksurfer it it loaded in the right > hemisphere in > tkmedit. > > Any ideas how this could have happened? > > Thanks > > ilana > > > > > > > > -- > >> ****************************** > >> Ilana Hairston ,PhD > >> Research Assistant Professor > >> 4250 Plymouth Rd. (rm 2439) > >> Psychiatry Department, Addiction Research Center > University of > >> Michigan, Ann Arbor MI 48109-2700 > >> Tel: 734-232-0232 <tel:734-232-0232> > <tel:734-232-0232 <tel:734-232-0232>>; Mobile: > 650-906-8449 <tel:650-906-8449> > <tel:650-906-8449 <tel:650-906-8449>> > > >> > >> ******************** > >> Reminder: Women do 66% of the work worldwide, earn > 10% of the > income, > >> and own 1% of the world's property > > > > > > > > > > > ---------------------------------------------------------------------- > > -- > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > Phone Number: 617-724-2358 <tel:617-724-2358> > <tel:617-724-2358 <tel:617-724-2358>> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > <tel:617-726-7422>> > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the > person to > whom it is addressed. If you believe this e-mail was > sent to you > in error and the e-mail contains patient information, > please > contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail > was sent to > you in error but does not contain patient information, > please > contact the sender and properly dispose of the e-mail. > > > > > -- > > ****************************** > Ilana Hairston ,PhD > Research Assistant Professor > 4250 Plymouth Rd. (rm 2439) > Psychiatry Department, Addiction Research Center > University of Michigan, Ann Arbor MI 48109-2700 > Tel: 734-232-0232 <tel:734-232-0232>; Mobile: > 650-906-8449 <tel:650-906-8449> > > ******************** > Reminder: Women do 66% of the work worldwide, earn 10% > of the income, and own 1% of the world's property > > > > > ------------------------------------------------------------------------ > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> Fax: > 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > > -- >> ****************************** >> Ilana Hairston ,PhD >> Research Assistant Professor >> 4250 Plymouth Rd. (rm 2439) >> Psychiatry Department, Addiction Research Center >> University of Michigan, Ann Arbor MI 48109-2700 >> Tel: 734-232-0232; Mobile: 650-906-8449 >> >> ******************** >> Reminder: Women do 66% of the work worldwide, earn 10% of the >> income, and own 1% of the world's property > > > > > > > -- >> ****************************** >> Ilana Hairston ,PhD >> Research Assistant Professor >> 4250 Plymouth Rd. (rm 2439) >> Psychiatry Department, Addiction Research Center >> University of Michigan, Ann Arbor MI 48109-2700 >> Tel: 734-232-0232; Mobile: 650-906-8449 >> >> ******************** >> Reminder: Women do 66% of the work worldwide, earn 10% of the income, >> and own 1% of the world's property > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
