Hi Antonella, have you looked at the help (--help) for the mri_glmfit and mri_glmfit-sim functions? If you still have questions after that let me know.
doug ps. If you're still learning about multiple comparison correction, I would recommend reading the following papers. They discuss validating gaussian random fields using monte carlo simulations ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/hayasaka.2003.ni.1014.clustersize.pdf ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/hagler.2006.ni.surfcluster.pdf Antonella Kis wrote: > Dear Doug, > > Can you please give me some details about how the corrections by > multiple comparisons are done? > Which step in the following code is doing the corrections? > > Are the corrections for multiple comparisons done by cache or by > cwpvalthresh or the corrections are done by some parts that are > implemented in the simulator (the Monte Carlo simulation)? > I am trying to better understand this simulator coding. > > > mri_glmfit-sim \ > --glmdir rh.age.glmdir \ > --cache 2 neg \ > --cwpvalthresh .025 \ > --overwrite > > Thank you very much. > AK > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
