Hi Nick, Sorry to bother you but I wondered if you had had the time to take a look at my dataset. Thank you very much, Myriam
2011/8/11 Myriam Siefert <myriamsief...@gmail.com> > Hi Nick, > I just would like to make sure that you had received my data, otherwise I > can send it again possibly by another mean if better. > Thanks a lot for your help > Sincerely, > Myriam > > > 2011/8/10 Myriam Siefert <myriamsief...@gmail.com> > >> Hi Bruce and Nick, >> Thank you so much for taking a look! >> Right now I'm uploading the set on the anonymous ftp server ( >> ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming) : >> talairach_issue.zip. It should appear to you in about 1 hour. >> It contains 2 versions of the same subject, the only difference is that >> OK-J-20bis was run with the -use-mritotal flag. >> Please let me know if there's any problem with the upload or if you need >> anything else. >> Sincerely, >> Myriam >> >> >> >> 2011/8/10 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> >>> >>> Hi Myriam >>> Could you send nick a dataset so he can take a look? >>> Thanks >>> Bruce >>> >>> On Aug 10, 2011, at 10:24 AM, Myriam Siefert <myriamsief...@gmail.com> >>> wrote: >>> >>> >>> Hi freesurfers, >>> >>> I'm currently re-processing with FS5.1 some data that i had already >>> processed with FS5.0 and am experiencing some unexpected issues with the >>> linear talairach transform. >>> >>> - While manually checking with Tkregister, I noticed that some off the >>> subjects had quite unsatisfying transforms , while no talairach failure was >>> detected on the log >>> - The transforms looked ok for those subjects in FS 5.0 >>> - I re-run autorecon1 using the -use-mritotal flag >>> - While still no error in the log file, the transforms usually then look >>> acceptable in Tkregister but completely wrong when talairach.xfm is loaded >>> in tkmedit : transformation in the top or bottom left corners, coronal and >>> transversal views interverted, sagittal views rotated by 90 degrees... >>> This happens for a few (not all) of the subjects that I've re-processed >>> with FS5.1 so far. >>> >>> I'm probably doing something wrong but can't figure out what nor what to >>> do about it. >>> Any advice would be highly appreciated. >>> >>> Thanks in advance >>> >>> Myriam Siefert, MD, MS candidate >>> Visiting scholar in SACNlab Northwestern University >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
