Hi Iven
we don't recommend that as many steps interact. For example, although we
don't do it automatically now, we do have procedures for automatically
correcting the aseg based on the subsequently created surfaces.
cheers
Bruce
On Thu, 21
Jul 2011, Fellhauer, Iven wrote:
Hi Bruce,
Yes, I would like to reduce the required calculation time, until desired
results are available.
Best regards,
Iven
-----Ursprüngliche Nachricht-----
Von: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Gesendet: Mittwoch, 20. Juli 2011 15:19
An: Fellhauer, Iven
Cc: freesurfer@nmr.mgh.harvard.edu
Betreff: Re: [Freesurfer] Calculate WM, GM and CSF volume
Hi Iven,
is there a reason you don't want to just run recon-all -all? It's more time
for the computer, but no more for you and will give you a lot more measures
cheers
Bruce
On Wed, 20 Jul
2011, Fellhauer, Iven wrote:
Dear All,
I want to calculate the volume of WM, GM and CSF. First of all I have converted
the .mri files to .mgz files. I have checked the ReconAllDevTable page to get
the recon-all switches to calculate the volume of GM, WM and CFS.
I want to use the following switches to calculate the volume, but I' m not sure
if this works/is right:
recon-all -autorecon1 - gcareg -canorm -careg -rmneck -skull-lta
-calabel -segstatts -subject <subject>
Did I miss something? Is there a better/faster way to get/calculate the
volumes? The command returns the correct results?
Best regards,
Iven Fellhauer
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