Hi Iven, is there a reason you don't want to just run recon-all -all? It's more time for the computer, but no more for you and will give you a lot more measures
cheers Bruce On Wed, 20 Jul 2011, Fellhauer, Iven wrote: > Dear All, > > I want to calculate the volume of WM, GM and CSF. First of all I have > converted the .mri files to .mgz files. I have checked the ReconAllDevTable > page to get the recon-all switches to calculate the volume of GM, WM and CFS. > > I want to use the following switches to calculate the volume, but I' m not > sure if this works/is right: > recon-all -autorecon1 - gcareg -canorm -careg -rmneck -skull-lta -calabel > -segstatts -subject <subject> > > Did I miss something? Is there a better/faster way to get/calculate the > volumes? The command returns the correct results? > > Best regards, > > Iven Fellhauer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
