and the dicoms are right off the machine? Hmmm. Can you send us a set so
we can see what went wrong?
cheers
Bruce
On Wed, 29 Jun 2011, Jordi Casals wrote:
Hi Bruce,
The machine is a 3T Philips Achieva.
On Tue, Jun 28, 2011 at 6:10 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Jordi
where did your dicoms come from?
Bruce
On Tue, 28 Jun 2011, Jordi Casals wrote:
Hello,
My name is Jordi Casals.
I've been trying to process some subjects with recon-all, but the procees
is giving me this error:
SUBJECT DFF_082
DATE Tue Jun 28 16:58:40 CEST 2011
USER neuro
HOST td547.pic.es
PROCESSOR x86_64
OS Linux
Linux td547.pic.es 2.6.18-238.9.1.el5 #1 SMP Tue Apr 12 18:53:46 EDT 2011
x86_64 x86_64 x86_64 GNU/Linux
$Id: recon-all,v 1.313.2.6 2010/08/04 15:50:56 nicks Exp $
/SOFTWR/freesurfer5/bin/recon-all
PWD $PATH/DFF_082
CMD mri_convert /DICOM/T13D/DFF_082/DFF_082_0002
$PATH/DFF_082/mri/orig/001.mgz
and the recon-all log have the following lines:
mri_convert
/DICOM/T13D/DFF_082/DFF_082_0002 $PATH/DFF_082/mri/orig/001.mgz
$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $
reading from /DICOM/T13D/DFF_082/DFF_082_0002...
Starting DICOMRead2()
dcmfile = /DICOM/T13D/DFF_082/DFF_082_0002
dcmdir = /DICOM/T13D/DFF_082
WARNING: tag ImageNumber not found
WARNING: tag image orientation not found
Ref Series No = 301
ERROR: bits = 0 not supported.
Send email to freesurfer@nmr.mgh.harvard.edu
Linux td547.pic.es 2.6.18-238.9.1.el5 #1 SMP Tue Apr 12 18:53:46 EDT 2011
x86_64 x86_64 x86_64 GNU/Linux
recon-all -s DFF_082 exited with ERRORS at Tue Jun 28 16:58:40 CEST 2011
I searched for possible solutions but some of them I don't really
understand what I really have to do and the other solutions didn't seem to work.
I don't know how to correct the error to reach the complete execution of
the process. If someone can help me or guide me to the solution, I would be very
grateful.
Thank you,
Jordi.
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contains patient information, please contact the Partners Compliance HelpLine at
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