Hi Adam, dura correction is not yet incorporated into the longitudinal stream and I doubt that it will just work out of the box, due to the fact that the longitudinals are in a different space than the inputs. Of course it could be done after the cross, but the surfaces there are not important for the longs.
For the hippo subfield, things look a little better. It has never been tested in the longitudinal stream and certainly does not use any longitudinal information, but it should run if you switch it on in the longs (let me know). Best, Martin On Fri, 2011-06-10 at 08:35 -0400, Thomas, Adam (NIH/NIMH) [E] wrote: > When using MEMPR images (Van der Kouwe et al., 2008) in the > longitudinal processing stream, when should the dura correction > (mris_makes_surfaces -dura) be ran? After the first cross-sectional > run of recon-all, after the final longitudinal run of recon-all, or > maybe both? > > > > I have the same question with respect to the “-hippo-subfields” flag. > Should this flag be specified on each run of recon-all in the > longitudinal processing stream? > > > > Thanks, > > -Adam > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
