Hi Chindhuri, we'll need to know what the error was that resulted in the non-zero exit status.
cheers Bruce On Thu, 2 Jun 2011, Chindhuri Selvadurai wrote: > Hello, > > I am not able to do a regular recon-all of my data on seychelles-- I am > doing the same thing I used to do. We have started moving our data to a > different location, however, since this is all new data, I don't see how > this could be the problem. > > I am using freesurfer 4, so I set this var before sourcing the script: >> setenv USE_STABLE_4_5_0 >> source /usr/local/freesurfer/stable4 > > My subjects_dir is /space/ventzl/36/users/RespMon12C/subjects > And my command is what it has always been: > >> /usr/bin/pbsubmit -q sergeant -l nodes=1:opteron -m chinsel -c 'recon-all > -s RMOCD025 -all -i > /cluster/archive/292/siemens/TrioTim-35006-20110504-155020-764000/764000-000004-000001.dcm > -mail chin...@nmr.mgh.harvard.edu -force' > > > I would appreciate your help! > > Thank you, > Chindhuri S > > ---------------------------- Original Message ---------------------------- > Subject: PBS JOB 1380351.seychelles.nmr.mgh.harvard.edu > From: "adm" <a...@nmr.mgh.harvard.edu> > Date: Thu, June 2, 2011 2:03 pm > To: chin...@nmr.mgh.harvard.edu > -------------------------------------------------------------------------- > > PBS Job Id: 1380351.seychelles.nmr.mgh.harvard.edu > Job Name: pbsjob_14 > Execution terminated > Exit_status=1 > resources_used.cput=00:00:00 > resources_used.mem=0kb > resources_used.vmem=0kb > resources_used.walltime=00:00:01 > > > > > Best, > > Chindhuri Selvadurai > > Psychiatric Neuroimaging, Manoach Lab > Martinos Center for Biomedical Imaging, MGH > Phone: (617)726-0307 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
