Hello, I am not able to do a regular recon-all of my data on seychelles-- I am doing the same thing I used to do. We have started moving our data to a different location, however, since this is all new data, I don't see how this could be the problem.
I am using freesurfer 4, so I set this var before sourcing the script: >setenv USE_STABLE_4_5_0 >source /usr/local/freesurfer/stable4 My subjects_dir is /space/ventzl/36/users/RespMon12C/subjects And my command is what it has always been: >/usr/bin/pbsubmit -q sergeant -l nodes=1:opteron -m chinsel -c 'recon-all -s RMOCD025 -all -i /cluster/archive/292/siemens/TrioTim-35006-20110504-155020-764000/764000-000004-000001.dcm -mail chin...@nmr.mgh.harvard.edu -force' I would appreciate your help! Thank you, Chindhuri S ---------------------------- Original Message ---------------------------- Subject: PBS JOB 1380351.seychelles.nmr.mgh.harvard.edu From: "adm" <a...@nmr.mgh.harvard.edu> Date: Thu, June 2, 2011 2:03 pm To: chin...@nmr.mgh.harvard.edu -------------------------------------------------------------------------- PBS Job Id: 1380351.seychelles.nmr.mgh.harvard.edu Job Name: pbsjob_14 Execution terminated Exit_status=1 resources_used.cput=00:00:00 resources_used.mem=0kb resources_used.vmem=0kb resources_used.walltime=00:00:01 Best, Chindhuri Selvadurai Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
