yes, that is fine. doug Fernanda Palhano wrote: > Doug, > > I have another question about doing a volumetric group analysis. I > used the command: > asegstats2table --subjects V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 > V14 V15 V16 V17 V18 V19 V20 V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 > V31 V32 --tablefile asegstats_new.txt --common-segs > To extract volume information for all my subjects. I'm interested in > use Left-Hippocampus and Right-Hippocampus to perform my group > analysis. Is it correct just import the columns data ( > Left-Hippocampus and Right-Hippocampus) in some statistical software? > > Thanks a lot, > Fernanda > > On Mon, May 16, 2011 at 4:25 PM, Fernanda Palhano > <nandapalh...@gmail.com <mailto:nandapalh...@gmail.com>> wrote: > > Doug, > > Actually, the file aseg.stats already exists. I think I only have > to use asegstats2table > <http://surfer.nmr.mgh.harvard.edu/fswiki/asegstats2table> to > combine the stats from all my subjects. > > > Fernanda > > > On Mon, May 16, 2011 at 4:15 PM, Fernanda Palhano > <nandapalh...@gmail.com <mailto:nandapalh...@gmail.com>> wrote: > > Yes. > > [Fernanda-Palhanos-Mac-Pro:group_analysis_tutorial/004/stats] > fernandapalhano% ls > aseg.stats lh.aparc.a2009s.stats > lh.supramarg.stats rh.aparc.a2009s.stats wmparc.stats > lh.aparc.a2005s.stats lh.aparc.stats > rh.aparc.a2005s.stats rh.aparc.stats > > Fernanda > > > On Mon, May 16, 2011 at 4:07 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> > wrote: > > does the stats directory exist? > doug > > Fernanda Palhano wrote: > > Hello, > > I'm trying to use mri_segstats to obtain some > subcortical volume stats. When running the command > line both in the tutorial data or in my own data, I > have the follow error: ERROR: could not open > stats/aseg.stats for writing > > > [Fernanda-Palhanos-Mac-Pro:buckner_data/tutorial_subjs/group_analysis_tutorial] > fernandapalhano% mri_segstats --seg mri/aseg.mgz --sum > stats/aseg.stats --pv mri/norm.mgz --ctab-default > --excludeid 0 --brain-vol-from-seg --brainmask > mri/brainmask.mgz --in mri/norm.mgz > --in-intensity-name norm --in-intensity-units MR > --etiv --subject 004 > Using defalt ctab > /Applications/freesurfer/FreeSurferColorLUT.txt > > $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 > greve Exp $ > cwd > cmdline mri_segstats --seg mri/aseg.mgz --sum > stats/aseg.stats --pv mri/norm.mgz --ctab-default > --excludeid 0 --brain-vol-from-seg --brainmask > mri/brainmask.mgz --in mri/norm.mgz > --in-intensity-name norm --in-intensity-units MR > --etiv --subject 004 > sysname Darwin > hostname Fernanda-Palhanos-Mac-Pro.local > machine i386 > user fernandapalhano > atlas_icv (eTIV) = 1792580 mm^3 (det: 1.086761 ) > ERROR: could not open stats/aseg.stats for writing > > Any ideas? > > Thanks, > Fernanda > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > The information in this e-mail is intended only for the > person to whom it is > addressed. If you believe this e-mail was sent to you in > error and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was > sent to you in error > but does not contain patient information, please contact > the sender and properly > dispose of the e-mail. > > > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
