does the stats directory exist? doug Fernanda Palhano wrote: > Hello, > > I'm trying to use mri_segstats to obtain some subcortical volume > stats. When running the command line both in the tutorial data or in > my own data, I have the follow error: ERROR: could not open > stats/aseg.stats for writing > > [Fernanda-Palhanos-Mac-Pro:buckner_data/tutorial_subjs/group_analysis_tutorial] > > fernandapalhano% mri_segstats --seg mri/aseg.mgz --sum > stats/aseg.stats --pv mri/norm.mgz --ctab-default --excludeid 0 > --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz > --in-intensity-name norm --in-intensity-units MR --etiv --subject 004 > Using defalt ctab /Applications/freesurfer/FreeSurferColorLUT.txt > > $Id: mri_segstats.c,v 1.69.2.1 2010/07/26 16:19:29 greve Exp $ > cwd > cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv > mri/norm.mgz --ctab-default --excludeid 0 --brain-vol-from-seg > --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name > norm --in-intensity-units MR --etiv --subject 004 > sysname Darwin > hostname Fernanda-Palhanos-Mac-Pro.local > machine i386 > user fernandapalhano > atlas_icv (eTIV) = 1792580 mm^3 (det: 1.086761 ) > ERROR: could not open stats/aseg.stats for writing > > Any ideas? > > Thanks, > Fernanda > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
