Dear List
Just to say that the below error turned out to be a problem with my
pathdef.m file.
Very best,
Lisa
On Mon, Apr 4, 2011 at 4:24 PM, Lisa Ronan <lisa.ro...@gmail.com> wrote:
> Dear List
>
> I have recently come up agains the same problem as described below, namely
> the error when I compute lGI reads
>
> >>reading filled volume...
> closing volume...
> ??? Undefined function or method 'fspecial' for input arguments of
> type 'char'.
> Error in ==> make_outer_surface at 31
> Gaussian = fspecial('gaussian',[2 2],1);
>
> ERROR: make_outer_surface did not create output file ....
>
> I have tried re-running the subject (as recommended below), as well as
> looking at any output from the mris_compute_lgi -debug flag directly, but
> the error is the same (Note I am trying to process subjects on a linux
> computer, and have verified that the same subject runs successfully on a
> Mac).
>
> I'd appreciate any suggestions you might have,
>
> Thanks in advance,
>
> Lisa
>
> On Wed, Sep 24, 2008 at 7:18 PM, Martin Kavec <martin.ka...@gmail.com>wrote:
>
>> Hi Jenifer,
>>
>> I don't know what the error exactly means, but sometimes just re-running
>> the
>> analysis helps.
>>
>> Best,
>>
>> Martin
>>
>> On Wednesday 24 September 2008 19:24:40 Juranek, Jenifer wrote:
>> > Hi,
>> > Encountering some difficulties with LGI on a RHEL4 box (64bit) with
>> MATLAB
>> > v7.6.0.324 (R2008a) installed. Subject was processed under fsv405.
>> Specific
>> > error is pasted below:
>> >
>> > Any suggestions to correct my error?
>> >
>> > Thanks,
>> > Jenifer
>> >
>> > >> reading filled volume...
>> >
>> > closing volume...
>> > ??? Undefined function or method 'fspecial' for input arguments of type
>> > 'char'.
>> >
>> > Error in ==> make_outer_surface at 31
>> > Gaussian = fspecial('gaussian',[2 2],1);
>> >
>> >
>> > ERROR: make_outer_surface did not create output file
>> > 'tmp-mris_compute_lgi-lh.pial/lh.pial-outer'! Linux
>> localhost.localdomain
>> > 2.6.9-5.ELsmp #1 SMP Wed Jan 5 19:29:47 EST 2005 x86_64 x86_64 x86_64
>> > GNU/Linux
>> >
>> > recon-all exited with ERRORS at Wed Sep 24 11:51:01 CDT 2008
>> >
>> > [jjuranek@localhost jjuranek_fsv405]$
>> >
>> >
>> > _______________________________________________
>> > Freesurfer mailing list
>> > Freesurfer@nmr.mgh.harvard.edu
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
