Dear List
I have recently come up agains the same problem as described below, namely
the error when I compute lGI reads
>>reading filled volume...
closing volume...
??? Undefined function or method 'fspecial' for input arguments of
type 'char'.
Error in ==> make_outer_surface at 31
Gaussian = fspecial('gaussian',[2 2],1);
ERROR: make_outer_surface did not create output file ....
I have tried re-running the subject (as recommended below), as well as
looking at any output from the mris_compute_lgi -debug flag directly, but
the error is the same (Note I am trying to process subjects on a linux
computer, and have verified that the same subject runs successfully on a
Mac).
I'd appreciate any suggestions you might have,
Thanks in advance,
Lisa
On Wed, Sep 24, 2008 at 7:18 PM, Martin Kavec <martin.ka...@gmail.com>wrote:
> Hi Jenifer,
>
> I don't know what the error exactly means, but sometimes just re-running
> the
> analysis helps.
>
> Best,
>
> Martin
>
> On Wednesday 24 September 2008 19:24:40 Juranek, Jenifer wrote:
> > Hi,
> > Encountering some difficulties with LGI on a RHEL4 box (64bit) with
> MATLAB
> > v7.6.0.324 (R2008a) installed. Subject was processed under fsv405.
> Specific
> > error is pasted below:
> >
> > Any suggestions to correct my error?
> >
> > Thanks,
> > Jenifer
> >
> > >> reading filled volume...
> >
> > closing volume...
> > ??? Undefined function or method 'fspecial' for input arguments of type
> > 'char'.
> >
> > Error in ==> make_outer_surface at 31
> > Gaussian = fspecial('gaussian',[2 2],1);
> >
> >
> > ERROR: make_outer_surface did not create output file
> > 'tmp-mris_compute_lgi-lh.pial/lh.pial-outer'! Linux localhost.localdomain
> > 2.6.9-5.ELsmp #1 SMP Wed Jan 5 19:29:47 EST 2005 x86_64 x86_64 x86_64
> > GNU/Linux
> >
> > recon-all exited with ERRORS at Wed Sep 24 11:51:01 CDT 2008
> >
> > [jjuranek@localhost jjuranek_fsv405]$
> >
> >
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