it means mris_fix_topology, which was the original topology correction algorithm. Florent Segonne wrote a newer (better) one based on non-separating loops but it seems to have a rare and hard-to-track-down bug in it where it can't find a path that should exist
cheers Bruce On Fri, 18 Feb 2011, Ilana Hairston wrote: > what does "old topo fixer" mean? > thanks > ilana > > On 15 February 2011 09:55, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > >> Hi Nasim, >> >> can you tar and gzip the entire subject dir and send it to us? I'll try >> to track it down. In the mean time if you just rerun with the old topo >> fixer it should work. Nick can post the appropriate flags >> >> cheers >> Bruce >> On Tue, 15 Feb >> 2011, Nasim Maleki wrote: >> >>> Hello, >>> >>> I'm facing the same problem for one of my subjects. Is there a general >> solution for this problem or would you solve this problem on a case by case >> basis? I saw posts from others with the same problem. >>> >>> Thanks for your help, >>> Nasim >>> On Nov 29, 2010, at 7:55 AM, Bruce Fischl wrote: >>> >>>> Hi Jennifer, >>>> >>>> if you put this on our drop site we'll take a look. >>>> >>>> cheers >>>> Bruce >>>> >>>> >>>> On Mon, 29 Nov 2010, Jennifer Addicks wrote: >>>> >>>>> Hello, >>>>> >>>>> I have completed cortical reconstructions for 79 of 80 scans without >>>>> error. However, the recon for one participant exited during topology >>>>> correction with the following error message: >>>>> >>>>> ERROR: _FindFacePath: could not find path! >>>>> Darwin jennifer-phillipss-macbook-pro.local 9.8.0 Darwin Kernel >>>>> Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; >>>>> root:xnu-1228.15.4~1/RELEASE_I386 i386 >>>>> >>>>> recon-all exited with ERRORS at Sun Nov 28 19:32:14 EST 2010 >>>>> >>>>> This error has been posted to the archive previously but the solution >>>>> does not seem to accompany it. Any help would be appreciated. >>>>> >>>>> Thanks, >>>>> Jennifer >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
