which version of FS are you using? I think the regheader was added for version 5. If you're using an earlier version, you'll need to create the registration with
tkregister2 --mov rawavg.mgz --targ aseg.mgz --regheader --reg rawreg.dat --noedit Then pass rawreg.dat to mri_label2vol with the --reg flag. doug Navid Shiee wrote: > Hi, > > I am trying to transform the volumetric labels from aseg.auto to the > original space. As suggested on the wiki I use the command > > mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-rawavg.mgz > --regheader aseg.mgz > However, I got ERROR: Option --regheader unknown > > If I don't use that option at all, the image is still in coronal > orientation although the header is changed to axial. Would you please > help me on this? > > Thanks, > -- > Navid > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
