It looks like AD8/00275571/surf/lh.sphere.reg may be corrupted. Can you load it in tksurfer? Is the disk full?
doug t...@ms36.hinet.net wrote: > > Dear FS experts, > > I read the tutorial and don't know how to perform average all > subjects' volume and surface by make_average_subject. I finish all > subjects' recon-all steps and try to average them. when I type > make_average_subjects --fsgd and it comes out the error message: > > $Id: make_average_surface,v 1.39.2.2 2009/07/30 23:33:52 nicks Exp $ > Wed Nov 17 22:35:55 CST 2010 > /root > setenv SUBJECTS_DIR /root/freesurfer/subjects/AD8 > output ddir is /root/freesurfer/subjects/AD8 > uid=0(root) gid=0(root) > groups=0(root),1(bin),2(daemon),3(sys),4(adm),6(disk),10(wheel) > ==================== > make_average_surface > ==================== > Wed Nov 17 22:35:55 CST 2010 > /root > /root/freesurfer/bin/make_average_surface > --fsgd AD8_fsgd.txt > input subjects: 00030096 00275571 04719019 06543135 06574530 07020866 > 08521537 08975833 > output subject: average > mri_add_xform_to_header -c auto > /root/freesurfer/subjects/AD8/average/mri/mni305.cor.mgz > /root/freesurfer/subjects/AD8/average/mri/mni305.cor.mgz > INFO: extension is mgz > > > #...@# Making lh registration template --------- > /root/freesurfer/subjects/AD8/average > mris_make_template -norot -annot aparc lh sphere.reg 00030096 00275571 > 04719019 06543135 06574530 07020866 08521537 08975833 lh.reg.template.tif > not aligning hemispheres before averaging. > zeroing medial wall in aparc > creating new parameterization... > > processing subject 00030096 (1 of 8) > reading spherical surface > /root/freesurfer/subjects/AD8/00030096/surf/lh.sphere.reg... > reading colortable from annotation file... > colortable with 36 entries read (originally > /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) > ripping medial wall... > computing parameterization for surface > /root/freesurfer/subjects/AD8/00030096/surf/lh.inflated.H... > curvature mean = -0.011, std = 0.968 > computing parameterization for surface > /root/freesurfer/subjects/AD8/00030096/surf/lh.sulc... > computing parameterization for surface > /root/freesurfer/subjects/AD8/00030096/surf/lh.smoothwm... > > processing subject 00275571 (2 of 8) > reading spherical surface > /root/freesurfer/subjects/AD8/00275571/surf/lh.sphere.reg... > f[244302]->v[1] = -1 - out of range! > > curvature mean = -0.001, std = 0.581 > curvature mean = -0.068, std = 1.569 > > which steps should I perprocess before I make average surface ? > > thanks > > JL > > > --- 本郵件來自HiNet WebMail --- > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
