wow, that's a completely wacky talairach xform. Did you run this straight on the dicom images? The talairach clearly failed for some reason. Try running mri_info on the dicoms to see if there is something strange in them
On Wed, 17 Nov 2010, liang wang wrote: > Hi FSusers, > > The terminal displays errors when I run "recon-all -autorecon1 -subjid ..." > to get a skull-stripped brain image. The processing exits with the following > errors regarding talairach transformation. Here is the talairach.xfm: > > MNI Transform File > % tkregister2 > > Transform_Type = Linear; > Linear_Transform = > 39.07553864 15.93667889 -36.86604309 -1474.05761719 > 1861.34423828 844.27008057 -1897.87268066 -75416.71093750 > -606.90667725 -274.30368042 622.14581299 24711.26757812 ; > > > Any suggestions would be appreciated. > > Best, > Liang > > #-------------------------------------------------------------------- > #...@# Talairach Failure Detection Wed Nov 17 10:15:36 EST 2010 > /mnt/cd/kastner/liang/resting_state/ph_062210/fs_skull/ph/mri > > talairach_afd -T 0.005 -xfm transforms/talairach.xfm > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) > Linux node37.cluster 2.6.18-128.el5 #1 SMP Wed Jan 21 10:41:14 EST 2009 > x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s ph exited with ERRORS at Wed Nov 17 10:15:36 EST 2010 > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
