Yes, I have made a template on the basis of many monkeys (mris_make_template) and then I have done spherical registeration for each individual monkey (to this template) by using mris_register. Now it is the final step and I have to run the make_average_subject but it generates an error saying that I don't have a lh and rh.aparc.annot files.
Apparently very old versions of freesurfer (version 3) didnt need these files. Am I right? Do you suggest to use old versions? Shahin Nasr PhD in Cognitive Neuroscience Martinos Imaging Center, MGH Harvard Medical School ________________________________ From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> To: Shahin <sha...@nmr.mgh.harvard.edu> Cc: Freesurfer <freesurfer@nmr.mgh.harvard.edu> Sent: Mon, November 8, 2010 12:33:03 PM Subject: Re: [Freesurfer] how to generate aparc.annotion files? Hi Shahin have you run spherical registration? If so, to what target? I don't think the monkey-to-human atlas aligment is that robust, so you would need a monkey geometry atlas (which is a lot easier to build as you don't need to do manual labeling for it). Probably someone on list has one? Bruce On Mon, 8 Nov 2010, Shahin wrote: > Thanks Bruce, > > To avoid this problem, is there anyway to run make_average_subject without > having lh and rh.aparc.annot files? > Shahin Nasr > > > PhD in Cognitive Neuroscience > Martinos Imaging Center, MGH > Harvard Medical School > > > > > ________________________________ > From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> > To: Shahin <sha...@nmr.mgh.harvard.edu> > Cc: Freesurfer <freesurfer@nmr.mgh.harvard.edu> > Sent: Mon, November 8, 2010 12:10:38 PM > Subject: Re: [Freesurfer] how to generate aparc.annotion files? > > Hi Shahin > > you'll need a monkey atlas based on manually labeled monkey folding > patterns. we don't have one, but it's possible that someone else on the > list does (it would be a lot easier to do for monkey than it was for human > as the folds are so much simpler) > > cheers > Bruce > > On Mon, 8 Nov 2010, Shahin wrote: > >> Hi Freesurfers, >> >> Anybody knows how can I make lh and rh.annotation.aparc files for a monkey? >> I >> need them initiate an brain averaging process. >> Shahin Nasr >> >> >> PhD in Cognitive Neuroscience >> Martinos Imaging Center, MGH >> Harvard Medical School >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine >at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and >properly > dispose of the e-mail. > > > >
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