Hi Shahin
have you run spherical registration? If so, to what target? I don't think
the monkey-to-human atlas aligment is that robust, so you would need a
monkey geometry atlas (which is a lot easier to build as you don't need to
do manual labeling for it). Probably someone on list has one?
Bruce
On Mon, 8 Nov 2010, Shahin wrote:
Thanks Bruce,
To avoid this problem, is there anyway to run make_average_subject without
having lh and rh.aparc.annot files?
Shahin Nasr
PhD in Cognitive Neuroscience
Martinos Imaging Center, MGH
Harvard Medical School
________________________________
From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
To: Shahin <sha...@nmr.mgh.harvard.edu>
Cc: Freesurfer <freesurfer@nmr.mgh.harvard.edu>
Sent: Mon, November 8, 2010 12:10:38 PM
Subject: Re: [Freesurfer] how to generate aparc.annotion files?
Hi Shahin
you'll need a monkey atlas based on manually labeled monkey folding
patterns. we don't have one, but it's possible that someone else on the
list does (it would be a lot easier to do for monkey than it was for human
as the folds are so much simpler)
cheers
Bruce
On Mon, 8 Nov 2010, Shahin wrote:
Hi Freesurfers,
Anybody knows how can I make lh and rh.annotation.aparc files for a monkey?
I
need them initiate an brain averaging process.
Shahin Nasr
PhD in Cognitive Neuroscience
Martinos Imaging Center, MGH
Harvard Medical School
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