Hi Nick, Thank you for your fast answer. I downloaded yesterday the version5 and I was trying to execute the whole process with the new one. It's running now, and I will tell you if it finishes without errors.
Thank you. Jordi. On Mon, Oct 18, 2010 at 4:26 PM, Nick Schmansky <ni...@nmr.mgh.harvard.edu>wrote: > is it possible for you to update to v5.0? v5 fixes the mris_volmask > library problems. > > n. > > On Mon, 2010-10-18 at 10:12 +0200, Jordi Casals wrote: > > Hello everybody. > > > > > > There is a few days I try to run a recon-all process with one subject > > and there is some problem that can't let the process finish correctly. > > The command I want to run is the next one: > > > > > > recon-all -autorecon2-wm -force > > -i /nfs/arpon/PROJCT/DEPR/orig/DICOM/T13D/GMI_544/GMI_544_0002 -s > > GMI_544 -qcache > > > > > > And the final errors I get are the next ones: > > > > > > /nfs/arpon/PROJCT/DEPR/proc/FREESURFER/OutPBS/AAA_000/mri > > > > > > mris_volmask --label_left_white 2 --label_left_ribbon 3 > > --label_right_white 41 > > --label_right_ribbon 42 --save_ribbon --save_distance AAA_000 > > > > > > mris_volmask.bin: symbol lookup error: /usr/lib/nvidia/libGL.so.1: > > undefined symbol: _nv000049gl > > Linux machine.domain 2.6.18-164.11.1.el5 #1 SMP Wed Jan 20 00:57:09 > > EST 2010 x86_64 x86_64 x86_64 GNU/Linux > > > > > > recon-all exited with ERRORS at Sun Oct 17 06:58:15 CEST 2010 > > > > > > I wanted to know if these errors are caused by the execution of the > > subject or if it's my work environment. > > > > > > Thank you, > > > > > > Jordi Casals > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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