Within a given session you must have all conditions represented. They all do not need to be in the same run, but they must all appear at least once across all runs. It looks like only 33 of the 69 are there. BTW, 69 is probably not a realistic number of conditions, way too big.
doug Gabriel A. Tobon wrote: > Sorry about that, I attached the wrong error msg from while I was > trying "selxavg3-sess". They are numbered 1-69. > > Wed Jul 14 18:24:59 EDT 2010 > INFO (kan_ecev_207ab): RunList = 008 009 010 011 012 013 014 015 016 > 017 018 019 020 021 > ERROR: there are 33 non-null conditions in the > paradigm file. However, 69 non-null conditions were > specified when mkanalysis was run. These must be made > consistent in order to run selxavg-sess. > > What is the difference between "selxavg-sess" and "selxavg3-sess"? > The error from "selxavg3-sess" says: > > ??? Error using ==> svd > Input to SVD must not contain NaN or Inf. > > Error in ==> cond at 40 > s = svd(A); > > Error in ==> fast_selxavg3 at 248 > XCond = cond(XtX); > > >> ------------------------------------------ > ERROR: fast_selxavg3() failed\n > > > Thank you, > > Gabe > > On Wed, Jul 14, 2010 at 6:21 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > 69 conditions? Are they numbered 1-69? That output does not have > the right error msg in it. > > Gabriel A. Tobon wrote: > > Hello, > > I have event related data with 69 different conditions, and > every condition does not appear in every run. This causes > selxavg-sess to throw an error. Part of the relevant debug > output is below. Why does every condition need to appear in > every run? > > Thank you, > > Gabe > > > echo "$sess " | & tee -a $LF > echo > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab > tee -a > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab > date | & tee -a $LF > date > tee -a > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log > Wed Jul 14 18:10:48 EDT 2010 > > if ( ! -d $sess ) then > if ( ! -d > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab > ) then > > set funcdir = $sess/$fsd > set funcdir = > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold > set anadir = $sess/$fsd/$analysisname > set anadir = > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze > if ( $#OutParent == 0 ) then > if ( 0 == 0 ) then > set anadir = $sess/$fsd/$analysisname > set anadir = > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze > else > else > echo anadir = $anadir | tee -a $LF > echo anadir = > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze > tee -a > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log > anadir = > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze > if ( -e $anadir && $DoGLMFit ) then > if ( -e > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze > && 1 ) then > echo "analysis $analysis alread exists for $sessbase" | tee -a $LF > echo analysis mc_analyze alread exists for kan_ecev_207ab > tee -a > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log > analysis mc_analyze alread exists for kan_ecev_207ab > if ( $Skip == 0 && $Overwrite == 0 && ! $monly && ! $perrun && > ! $jkrun ) then > if ( 0 == 0 && 0 == 0 && ! 0 && ! 0 && ! 0 ) then > echo "ERROR: analysis $analysis already exists. You must " | > tee -a $LF > echo ERROR: analysis mc_analyze already exists. You must > tee -a > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log > ERROR: analysis mc_analyze already exists. You must > echo " specify whether to -skip or -overwrite" | tee -a $LF > echo specify whether to -skip or -overwrite > tee -a > > /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log > specify whether to -skip or -overwrite > exit 1 ; > exit 1 > > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. 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