Sorry about that, I attached the wrong error msg from while I was trying "selxavg3-sess". They are numbered 1-69.
Wed Jul 14 18:24:59 EDT 2010 INFO (kan_ecev_207ab): RunList = 008 009 010 011 012 013 014 015 016 017 018 019 020 021 ERROR: there are 33 non-null conditions in the paradigm file. However, 69 non-null conditions were specified when mkanalysis was run. These must be made consistent in order to run selxavg-sess. What is the difference between "selxavg-sess" and "selxavg3-sess"? The error from "selxavg3-sess" says: ??? Error using ==> svd Input to SVD must not contain NaN or Inf. Error in ==> cond at 40 s = svd(A); Error in ==> fast_selxavg3 at 248 XCond = cond(XtX); >> ------------------------------------------ ERROR: fast_selxavg3() failed\n Thank you, Gabe On Wed, Jul 14, 2010 at 6:21 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > 69 conditions? Are they numbered 1-69? That output does not have the right > error msg in it. > > Gabriel A. Tobon wrote: > >> Hello, >> >> I have event related data with 69 different conditions, and every >> condition does not appear in every run. This causes selxavg-sess to throw >> an error. Part of the relevant debug output is below. Why does every >> condition need to appear in every run? >> >> Thank you, >> >> Gabe >> >> >> echo "$sess " | & tee -a $LF >> echo >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab >> tee -a >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log >> >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab >> date | & tee -a $LF >> date >> tee -a >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log >> Wed Jul 14 18:10:48 EDT 2010 >> >> if ( ! -d $sess ) then >> if ( ! -d >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab >> ) then >> >> set funcdir = $sess/$fsd >> set funcdir = >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold >> set anadir = $sess/$fsd/$analysisname >> set anadir = >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze >> if ( $#OutParent == 0 ) then >> if ( 0 == 0 ) then >> set anadir = $sess/$fsd/$analysisname >> set anadir = >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze >> else >> else >> echo anadir = $anadir | tee -a $LF >> echo anadir = >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze >> tee -a >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log >> anadir = >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze >> if ( -e $anadir && $DoGLMFit ) then >> if ( -e >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze >> && 1 ) then >> echo "analysis $analysis alread exists for $sessbase" | tee -a $LF >> echo analysis mc_analyze alread exists for kan_ecev_207ab >> tee -a >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log >> analysis mc_analyze alread exists for kan_ecev_207ab >> if ( $Skip == 0 && $Overwrite == 0 && ! $monly && ! $perrun && ! $jkrun ) >> then >> if ( 0 == 0 && 0 == 0 && ! 0 && ! 0 && ! 0 ) then >> echo "ERROR: analysis $analysis already exists. You must " | tee -a $LF >> echo ERROR: analysis mc_analyze already exists. You must >> tee -a >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log >> ERROR: analysis mc_analyze already exists. You must >> echo " specify whether to -skip or -overwrite" | tee -a $LF >> echo specify whether to -skip or -overwrite >> tee -a >> /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log >> specify whether to -skip or -overwrite >> exit 1 ; >> exit 1 >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >
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