Hi Bruce, It is the orig.mgz (cannot check right now if the nu is also dark). Many thanks, frank
2010/6/18 Bruce Fischl <fis...@nmr.mgh.harvard.edu>: > Hi Frank, > is it the orig.mgz that is dark, or the nu? > > cheers > Bruce > > On Fri, 18 Jun 2010, Frank Scharnowski wrote: > >> Dear Freesurfers, >> >> When importing a 3T MDEFT structural scan into freesurfer with >> 'mri_convert subjectname.nii 001.mgz', the image looks extremely dark >> (see attached tkmedit snapshot). >> The results of recon all are suboptimal, probably due to the bad >> intensity normalization. In SPM the structural looks just fine. >> Is there a way to correct for this? >> >> Many thanks for your help, >> frank >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Dr. Frank Scharnowski Wellcome Trust Centre for Neuroimaging University College London 12 Queen Square London WC1N 3BG United Kingdom f.scharnow...@fil.ion.ucl.ac.uk http://sites.google.com/site/scharnowskifrank/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
