Hi Frank, is it the orig.mgz that is dark, or the nu? cheers Bruce
On Fri, 18 Jun 2010, Frank Scharnowski wrote: > Dear Freesurfers, > > When importing a 3T MDEFT structural scan into freesurfer with > 'mri_convert subjectname.nii 001.mgz', the image looks extremely dark > (see attached tkmedit snapshot). > The results of recon all are suboptimal, probably due to the bad > intensity normalization. In SPM the structural looks just fine. > Is there a way to correct for this? > > Many thanks for your help, > frank > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
