So I have to write : mri_convert -it dicom -i (first image) -o (name of the file) ? I did it outputing orig.mgz as usually before getting the error .
Antoine ________________________________________________________________________________ Bruce Fischl <fis...@nmr.mgh.harvard.edu> a écrit : > mri_convert can be used to change the format, assuming it is standard > dicom. > > cheers > Bruce > > On Tue, 4 May 2010, Antoine Leflon wrote: > >> My files are dicoms and have no extension in the end of their name >> (IM_0465 for example) . Is it possible to change the format ? >> >> thanks , >> >> Antoine >> >> >> ________________________________________________________________________________ >> >> Talairach is about orientation. What is the format of your file? If it >> is .hdr and.img, it will fail. >> >> >> On 4 May 2010 11:43, Antoine Leflon >> <antoine1.lef...@etudiant.univ-lille1.fr> wrote: >> >> Hi all , >> >> I've used data from another Doctor , freesurfer told me the FOV was >> 330 so I put the flag -cw256 in the command recon-all but the >> Talairach just failed ... >> I got this error message . Can someone explain please ? >> ________________________________________________________________________________ >> >> #...@# Talairach Failure Detection Tue May 4 12:31:55 IST 2010 >> /home/cami/freesurfer/subjects/a1/mri >> >> talairach_afd -T 0.005 -xfm transforms/talairach.xfm >> >> ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm >> ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) >> Linux pride 2.6.31-14-generic #48-Ubuntu SMP Fri Oct 16 14:04:26 UTC >> 2009 i686 GNU/Linux >> >> recon-all exited with ERRORS at Tue May 4 12:31:55 IST 2010 >> ________________________________________________________________________________ >> >> thanks , >> >> Antoine >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
