I'm looking through it and also looking at tkregister2 help, and I have some questions 1)Does Recon only work on fully structural data? If you have funtional information on it will recon fail? 2)Also- Does it matter what the files are named... for ex- if the first 50 are named JohnSmith_001_01_01.img and after that they are named John^Smith_051_01_01.img... does it make a difference enough to fail recon?
On 30 March 2010 11:54, Martin Kavec <martin.ka...@gmail.com> wrote: > Hi Jan, > > the place to look at is > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach > > Best, > > Martin > > On Tuesday 30 March 2010 12:30:35 Janani Dhinakaran wrote: > > Hello everyone, > > I wanted to know what I can do to fix this error- it occurs when I'm > > running recon-all -all -s Subject > > > > Tue Mar 30 11:27:20 BST 2010 > > talairach_avi done > > #-------------------------------------------- > > #...@# Talairach Failure Detection Tue Mar 30 11:27:20 BST 2010 > > /home/s0964091/Desktop/Newdata/JS/mri > > > > talairach_afd -T 0.005 -xfm transforms/talairach.xfm > > > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > > ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) > > Linux CRIC-0012 2.6.31-20-generic #58-Ubuntu SMP Fri Mar 12 04:38:19 UTC > > 2010 x86_64 GNU/Linux > > > > recon-all exited with ERRORS at Tue Mar 30 11:27:20 BST 2010 > > > > Thank you for your help > > Jan > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- I am the Sun, I know no darkness.
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