Hi,
I've got some troubles computing the lGI.
It seems to be a trouble related to the class.m and strel.m matlab
functions.
Does anyone meet such problem?
Thanks
Frederic
gray.local:andersson 11:50am [12] recon-all -s MNI_SINGLESUBJ -localGI
-no-isrunning
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.1.0
Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0
INFO: SUBJECTS_DIR is /usr/remote/Darwin/freesurfer/freesurfer450/
subjects
Actual FREESURFER_HOME /usr/remote/Darwin/freesurfer/freesurfer450
-rw-rw-r-- 1 andersson flat 750913 Dec 17 09:29 /usr/remote/Darwin/
freesurfer/freesurfer450/subjects/MNI_SINGLESUBJ/scripts/recon-all.log
Darwin gray.local 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15
16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
INFO: current FREESURFER_HOME does not match that of previous
processing.
Current: /usr/remote/Darwin/freesurfer/freesurfer450
Previous: /usr/remote/Darwin/freesurfer/freesurfer410
/usr/remote/Darwin/freesurfer/freesurfer450/subjects/MNI_SINGLESUBJ/surf
#--------------------------------------------
#...@# Local Gyrification Index lh Thu Dec 17 11:50:50 CET 2009
\n mris_compute_lgi --i lh.pial \n
=================
rm -Rf /usr/remote/Darwin/freesurfer/freesurfer450/subjects/
MNI_SINGLESUBJ/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mkdir -p /usr/remote/Darwin/freesurfer/freesurfer450/subjects/
MNI_SINGLESUBJ/surf/tmp-mris_compute_lgi-lh.pial
=================
=================
mris_fill -c -r 1 lh.pial /usr/remote/Darwin/freesurfer/freesurfer450/
subjects/MNI_SINGLESUBJ/surf/tmp-mris_compute_lgi-lh.pial/
lh.pial.filled.mgz
=================
reading surface from lh.pial...
writing filled volume to /usr/remote/Darwin/freesurfer/freesurfer450/
subjects/MNI_SINGLESUBJ/surf/tmp-mris_compute_lgi-lh.pial/
lh.pial.filled.mgz...
conforming output volume
setting resolution for intermediate calculations to 1.0000
=================
make_outer_surface('/usr/remote/Darwin/freesurfer/freesurfer450/
subjects/MNI_SINGLESUBJ/surf/tmp-mris_compute_lgi-lh.pial/
lh.pial.filled.mgz',15,'/usr/remote/Darwin/freesurfer/freesurfer450/
subjects/MNI_SINGLESUBJ/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-
outer'); exit
=================
Warning: Unable to open display 'iconic'. You will not be able to
display graphics on the screen.
< M A T L A B >
Copyright 1984-2007 The MathWorks, Inc.
Version 7.5.0.338 (R2007b)
August 9, 2007
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> reading filled volume...
interactive shell
interactive shell
closing volume...
??? Error using ==> class
The CLASS function must be called from a class constructor.
Error in ==> strel>MakeArbitraryStrel at 188
se = class(se, 'strel');
Error in ==> strel at 122
se = MakeArbitraryStrel(params{:});
Error in ==> strel>MakeBallStrel at 530
se.decomposition = strel(nhood,height);
Error in ==> strel at 141
se = MakeBallStrel(params{:});
Error in ==> make_outer_surface at 41
se=strel('ball',se_diameter,se_diameter);
>>
Frédéric ANDERSSON, PhD
Ingénieur de Recherche INSERM / IFR 135 - Imagerie fonctionnelle
Faculté de Médecine
10 Blvd Tonnellé Bat. Vialle - 2ème étage - Bureau 205
BP 3223 - 37032 TOURS cedex - FRANCE
Tél : +33 (0) 2 47 36 61 37 / Fax: +33 (0) 2 47 36 62 07
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