I had this same problem running on a cluster, if you can get your
sysadmin to install:
libXScrnSaver
It should fix it.
Good luck,
-Sam
On 13/12/2009 2:32 PM, Nick Schmansky wrote:
> i'm guessing from the 'compute-0-1.local' bit of your output that this
> was run on cluster, which probably doesnt have the X-libs installed
> (clusters generally dont include the graphics libs). unfortunately, our
> mris_volmask is built against a VTK lib which relies upon linking
> against these (even though it doesnt use them: VTK is primarily a
> visualization lib, but has some very useful volume/surface routines as
> well). the only short-term solution for you is to use
> mris_volmask_novtk, which is an alternate binary that doesnt use vtk,
> but doesnt produce nearly the quality cortical ribbon that VTK does.
> but it will have to do (and is irrelevant if you need only the cortical
> and subcortical data: the volmask is used only the create the aparc
> +aseg.mgz and wmparc.mgz files).
>
> for the long-term, we are working on a replacement to mris_volmask that
> doesnt use the VTK lib, but produces identical (or nearly so) results.
> this wont appear for a couple more months though.
>
> n.
>
> On Sun, 2009-12-13 at 10:57 +0900, SG KIM wrote:
>> Dear Freesurfer,
>> I ran recon-all with -all flag,
>> and I've got an error message as below:
>>
>>> mris_volmask.bin: error while loading shared libraries: libXss.so.1:
>> cannot open shared object file: No such file or directory
>>> Linux compute-0-1.local 2.6.18-92.1.13.el5PAE #1 SMP Wed Sep 24
>> 20:07:49 EDT 2008 i686 i686 i386 GNU/Linux
>>> recon-all exited with ERRORS at Tue Dec 8 07:43:35 KST 2009
>>
>> I ran it on {Intel(R) Xeon(R) CPU E5345 @ 2.33GHz (4096 KB cache)}
>> with {Linux compute-0-1.local 2.6.18-92.1.13.el5PAE #1 SMP Wed Sep 24
>> 20:07:49 EDT 2008 i686 i686 i386 GNU/Linux}
>>
>>
>> I've googled it, only one case was posted via this mailing list.
>> Yes, I want to know why this error occur but also how to fix it.
>>
>>
>> Please help me out here! 'A`
>>
>>
>> Mr. SG KIM.
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
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