Hi, I'm getting an error trying to run a reconstruction.
I'm working on multnomah and my subjects directory is: /autofs/space/multnomah_002/users/Cashlab/ *I'm using the following command:* [multnomah:Cashlab] (nmr-std-env) recon-all -autorecon1 -autorecon2 -subject MG15_SurferOutput -i MG15/MG_15_SPGR/1.2.840.113619.2.176.3596.6688992.17364.1172489897.387.dcm *I get the following error:* #...@# Talairach Failure Detection Sun Dec 13 11:51:46 EST 2009 /autofs/space/multnomah_002/users/Cashlab/MG15_SurferOutput/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0308, pval=0.0034 < threshold=0.0050) Linux multnomah 2.6.9-67.ELsmp #1 SMP Fri Nov 16 12:48:03 EST 2007 i686 i686 i386 GNU/Linux recon-all exited with ERRORS at Sun Dec 13 11:51:46 EST 2009 *My environment information is:* -------- freesurfer-Linux-centos4-stable-v4.5.0-20091124 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer/stable4 FSFAST_HOME /usr/local/freesurfer/stable4/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /space/sake/3/users/inverse/subjects MNI_DIR /usr/local/freesurfer/stable4/mni FSL_DIR /usr/pubsw/packages/fsl/current Any help will be appreciated! Thanks, Rodrigo Zepeda
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
