did you run out of disk space? Is the file aseg.auto_noCCseg.label_intensities.txt writeable in the subject's dir? On Wed, 18 Nov 2009, Narly A Golestani wrote:
> > > Dear all, > > I am encountering a problem with 'recon-all -all' with one subject using > freesurfer version 4.5 which I did not encounter when using version 4.4. > With the older version, the stream ran without error, whereas the > processing produces the following error with version 4.5: > > > ######################## > > ..... > > gca peak WM_hypointensities = 0.15609 (88) > gca peak non_WM_hypointensities = 0.10304 (57) > gca peak Optic_Chiasm = 0.34849 (76) > mri_ca_label GCA sequential renormalization: label 28 not consistently > computed. > > not using caudate to estimate GM means > setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 > estimating mean gm scale to be 1.00 x + 0.0 > estimating mean wm scale to be 1.00 x + 0.0 > estimating mean csf scale to be 0.97 x + 0.0 > Left_Pallidum too bright - rescaling by 0.998 (from 1.000) to 107.8 (was > 108.0) > Right_Pallidum too bright - rescaling by 0.998 (from 1.000) to 107.8 (was > 108.0) > saving intensity scales to aseg.auto_noCCseg.label_intensities.txt > Linux aria 2.6.16.60-0.39.3-smp #1 SMP Mon May 11 11:46:34 UTC 2009 x86_64 > x86_64 x86_64 GNU/Linux > > recon-all exited with ERRORS at Wed Nov 18 04:02:23 CET 2009 > > ######################## > > I have tried simply rerunning the recon-all -all stream but the error is > reproduced consistently. This seems strange since there was no such > error with the very same data using version 4.4. > > Is there any way to correct for this problem so that the stream can run > successfully? > > > Thanks in advance and best wishes, > Narly. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
