Dear all,
I am encountering a problem with 'recon-all -all' with one subject using freesurfer version 4.5 which I did not encounter when using version 4.4. With the older version, the stream ran without error, whereas the processing produces the following error with version 4.5: ######################## ..... gca peak WM_hypointensities = 0.15609 (88) gca peak non_WM_hypointensities = 0.10304 (57) gca peak Optic_Chiasm = 0.34849 (76) mri_ca_label GCA sequential renormalization: label 28 not consistently computed. not using caudate to estimate GM means setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.97 x + 0.0 Left_Pallidum too bright - rescaling by 0.998 (from 1.000) to 107.8 (was 108.0) Right_Pallidum too bright - rescaling by 0.998 (from 1.000) to 107.8 (was 108.0) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt Linux aria 2.6.16.60-0.39.3-smp #1 SMP Mon May 11 11:46:34 UTC 2009 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Wed Nov 18 04:02:23 CET 2009 ######################## I have tried simply rerunning the recon-all -all stream but the error is reproduced consistently. This seems strange since there was no such error with the very same data using version 4.4. Is there any way to correct for this problem so that the stream can run successfully? Thanks in advance and best wishes, Narly. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
