I think you can just run mri_convert, passing it one dicom file from the series, eg
mri_convert one.dcm 001.mgz this will preserve the resolution. doug Julie McEntee wrote: > Hello, > > I have T1-weighted data from Philips 3 T scanner obtained at a > resolution of 0.898 X 0.898 X 0.9 mm in both dicom (8 bit) and par/rec > (pixel size = int16) format. I would like to preserve the acquisition > resolution of the data in par/rec format; what is the best way to > convert such data to mgz format for analysis in freesurfer? A command > line example would be helpful, as I am new to freesurfer. > > Thanks for your help, > > Julie > > Julie E. McEntee, MA, CCRP > Senior Research Program Coordinator > Department of Psychiatry- Neuroimaging > Johns Hopkins University School of Medicine > 600 N. Wolfe St./Phipps 300 > Baltimore, MD 21287 > Phone: 410-502-0468 > Fax: 410-614-3676 > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
