And does the "getpwdcmd: command not found" still occur? Anna Rotarska-Jagiela wrote: > When I type which getpwdcmd, I get: > /apps/prod/i686/freesurfer-4.4.0/fsfast/bin/getpwdcmd > And I checked, the file is there. > > Anna > > > 2009/11/17 Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > What happens when you type > > which getpwdcmd > > And can you see the file in $FREESURFER_HOME/fsfast/bin? > > Anna Rotarska-Jagiela wrote: > > Dear Doug, > thank you for your response. The path you named is added. Is > there anything else we can check? > Anna > > 2009/11/16 Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> > > > Try adding $FREESURFER_HOME/fsfast/bin to your path. > > > doug > > Anna Rotarska-Jagiela wrote: > > > > > > Dear Freesurfer Users, > > during the creation of average brain with Freesurfer, I > got the > > following ERROR message: > > > > getpwdcmd: command not found > > > > ERROR: format for rh.orig.avg.area.mgh not recognized. > > > > ERROR: make_average_surface > > > > do you have any idea what this might be? The Freesurfer > version I'm > > using is 4.4.0. I also attach the log file. > > I would appreciate your help. > > Sincerely, > > Anna Rotarska-Jagiela > > > > > > > > -- > > ------ > > Dr. Anna Rotarska-Jagiela > > Max Planck Institute for Brain Research > > Department of Neurophysiology > > Deutschordenstr. 46 > > 60528 Frankfurt a.M. > > Germany > > Email: rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de> > <mailto:rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de>> > > <mailto:rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de> > <mailto:rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de>>> > > Phone: +49 69 6301 83782 > > Fax: +49 69 6301 3833 > > ------ > > http://www.mpih-frankfurt.mpg.de/global/Np/Staff/rotarska.htm > > ------ > > > > > ------------------------------------------------------------------------ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > -- > ------ > Dr. Anna Rotarska-Jagiela > Max Planck Institute for Brain Research > Department of Neurophysiology > Deutschordenstr. 46 > 60528 Frankfurt a.M. > Germany > Email: rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de> > <mailto:rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de>> > > Phone: +49 69 6301 83782 > Fax: +49 69 6301 3833 > ------ > http://www.mpih-frankfurt.mpg.de/global/Np/Staff/rotarska.htm > ------ > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > > -- > ------ > Dr. Anna Rotarska-Jagiela > Max Planck Institute for Brain Research > Department of Neurophysiology > Deutschordenstr. 46 > 60528 Frankfurt a.M. > Germany > Email: rotar...@mpih-frankfurt.mpg.de > <mailto:rotar...@mpih-frankfurt.mpg.de> > Phone: +49 69 6301 83782 > Fax: +49 69 6301 3833 > ------ > http://www.mpih-frankfurt.mpg.de/global/Np/Staff/rotarska.htm > ------
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
