Hi: Ok... I test it with the command that you told me, and I added the option "wsthresh 35"... Then I got a good skull stripped image...
Sincerely, Gonzalo Rojas Costa Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl Nick Schmansky escribió: > another thing to try is include the flag -no-wsgcaatlas flag, like this: > > recon-all -s subjid -skull-strip -no-wsgcaatlas > > this bypasses usage of the atlas. > > if that fails, you can send me the 001.mgz input file to the filedrop: > > https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > n. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
