another thing to try is include the flag -no-wsgcaatlas flag, like this: recon-all -s subjid -skull-strip -no-wsgcaatlas
this bypasses usage of the atlas. if that fails, you can send me the 001.mgz input file to the filedrop: https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html n. On Wed, 2009-10-07 at 16:48 -0400, Gonzalo Rojas wrote: > Hi: > > Yes... the occipital white matter has value 110 in general... The > frontal white matter has voxels with values 94 to 117 aprox... > > Sincerely, > > > Gonzalo Rojas Costa > Department of Radiology > Las Condes Clinic > Lo Fontecilla 441, Las Condes, Santiago, Chile. > Tel: 56-2-2105170 > Cel: 56-9-97771785 > www.clc.cl > > > Nick Schmansky escribió: > > check if the whitematter in the file T1.mgz is around value 110. if > > not, then put some control points in the white matter in nu.mgz and > > re-run recon-all. > > > > n. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
