Hi all, I have a question regarding cortical thickness estimation in freesurfer. I was wondering whether it is possible to input in freesurfer the gray matter segmentation as an a priori. Specifically, I run freesurfer on a set of cases on which I previously run spm and obtained a good discrimination between GM, WM and CSF. I would like to use these segmentation instead to proceed with manual edits on freesurfer segmentation output for gray matter segmentation, that sometimes was not segmented correctly. Would this be possible?
Thanks a lot, Elisa
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