Bruce, You're right: the skullstripping didn't go well so that part of the skull is still present. I'll try to fix that. Thanks,
Ed On 1 Sep 2009, at 16:03, Bruce Fischl wrote: > I see. Have you looked at the orig.nofix surface? If there is a huge > defect (e.g. cerebellum or skull connected to cortex) then things > will fail. Make sure nothing is dramatically wrong with it or the > aseg.mgz > first. > > Bruce > > > On > Tue, 1 Sep 2009, Ed Gronenschild wrote: > >> Hi Bruce, >> >> The log file tells that mris_fix_topology did fail (euler number ! >> = 2) >> and that's why the topo_fixer was used. >> >> Ed >> >> On 1 Sep 2009, at 15:12, Bruce Fischl wrote: >> >>> did you try using the old (default) topology fixer? Usually >>> mris_fix_topology is called in recon-all unless you specify >>> otherwise. >>> >>> cheers, >>> Bruce >>> On >>> Tue, 1 Sep 2009, Ed Gronenschild wrote: >>> >>>> Hi, >>>> >>>> I got the following error during processing my subject nr 104 with >>>> recon-all: >>>> >>>> ERROR: - FindPacePath: could not find path. >>>> >>>> The error log tells that it occurred during execution of the >>>> command >>>> >>>> mris_topo_fixer -mgz -warnings 104 rh >>>> >>>> What to do? >>>> >>>> Ed >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
