I see. Have you looked at the orig.nofix surface? If there is a huge defect (e.g. cerebellum or skull connected to cortex) then things will fail. Make sure nothing is dramatically wrong with it or the aseg.mgz first.
Bruce On Tue, 1 Sep 2009, Ed Gronenschild wrote: > Hi Bruce, > > The log file tells that mris_fix_topology did fail (euler number != 2) > and that's why the topo_fixer was used. > > Ed > > On 1 Sep 2009, at 15:12, Bruce Fischl wrote: > >> did you try using the old (default) topology fixer? Usually >> mris_fix_topology is called in recon-all unless you specify otherwise. >> >> cheers, >> Bruce >> On >> Tue, 1 Sep 2009, Ed Gronenschild wrote: >> >>> Hi, >>> >>> I got the following error during processing my subject nr 104 with >>> recon-all: >>> >>> ERROR: - FindPacePath: could not find path. >>> >>> The error log tells that it occurred during execution of the command >>> >>> mris_topo_fixer -mgz -warnings 104 rh >>> >>> What to do? >>> >>> Ed >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
