Thanks. I tried running it on oct and I'm getting another error earlier on recon process.
The subjects directory is: /homes/11/rzepeda/Recon I'm using the following command: [oct:~/Recon] (nmr-std-env) recon-all -autorecon1 -autorecon2 -subject MG25_SurferOutput -i MG25/MRI/1.3.12.2.1107.5.2.30.26039.3.2007081618514610873067809.dcm I get the following error: $Id: gauss_4dfp.c,v 1.2.2.1 2009/05/15 21:44:49 nicks Exp $ Reading: talsrcimg.4dfp.img Writing: talsrcimg_g11.4dfp.img image dimensions 256 256 256 padded to 288 288 288 processing volume 1gauss_4dfp: talsrcimg_g11.4dfp.img write error ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=255 ERROR: mpr2mni305 execution aborted ERROR: mpr2mni305 failed, see transforms/talairach_avi.log Is this related to the same problem as before or is it something different? I was surprised that multnomah wasn't able to handle that recon, I've run many recons there and never had this problem. Thank you! Rodrigo On Wed, Aug 26, 2009 at 1:34 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > Looks like that is a pretty weak computer. Can you run it on a stronger > computer? > > Rodrigo Zepeda wrote: > >> Hi, >> >> I'm getting an error trying to run a reconstruction. >> >> I'm working on multnomah and my subjects directory is: >> /autofs/space/multnomah_002/users/Cashlab/ >> >> I'm using the following command: >> >> [multnomah:Cashlab] (nmr-std-env) recon-all -autorecon1 -autorecon2 >> -subject MG25_SurferOutput -i >> MG25/MRI/1.3.12.2.1107.5.2.30.26039.3.2007081618514610873067809.dcm >> >> >> I get the following error: >> >> writing labeled volume to aseg.auto_noCCseg.mgz... >> ERROR: opening pipe gzip -f -c > aseg.auto_noCCseg.mgz, errno = 12 >> Cannot allocate memory >> mri_ca_label: MRIwrite(aseg.auto_noCCseg.mgz) failed >> >> My environment information is: >> >> -------- freesurfer-Linux-centos4-stable-v4.5.0-20090823 -------- >> Setting up environment for FreeSurfer/FS-FAST (and FSL) >> FREESURFER_HOME /usr/local/freesurfer/stable4 >> FSFAST_HOME /usr/local/freesurfer/stable4/fsfast >> FSF_OUTPUT_FORMAT nii >> SUBJECTS_DIR /autofs/space/multnomah_002/users/Cashlab >> MNI_DIR /usr/local/freesurfer/stable4/mni >> FSL_DIR /usr/pubsw/packages/fsl/current >> >> Any help will be appreciated! >> >> Thanks, >> >> Rodrigo >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > >
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