Hi Jared, mri_robust_register might be good for the task, the problem: - only worked with structural intensity data so far - I never tested it on 2D data. It should not be too difficult to get it to run, though. Can you send me some of your images, and I will try to add the functionality (if not too difficult).
-Martin On Fri, 2009-08-14 at 18:18 -0400, Jared Price wrote: > Hi all, > I have some images (2-d (single slice)) from mouse brains which show > gene expression data from in-situ hybridization from several different > mice. I would like to align each of these images with one another. > Does anyone know of a really good tool for that sort of thing? Ideally > I am looking to perform a 6-parameter transform of these images to bring > them all into the same space. I know mri_robust_register does something > similar for structural images of the human brain. Does anyone know of a > good tool for this kind of thing? I thought someone in the freesurfer > world might know. > All the best and thanks for the help, > Jared > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
